Hold on. Is the current behavior self-consistent, i.e. one could call it an undocumented feature? If so someone may have noticed this and written their ACLs accordingly. It's not friendly to change the meaning of existing installations' ACLs in the middle of RE24.
OTOH if current behavior is broken even as a "feature", fix away. E.g. if clients can choose which ACLs will apply in the subordinate by picking a base DN inside vs outside the subordinate.